Variant report

Variant	rs2203432
Chromosome Location	chr2:99434758-99434759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99434258..99436227-chr2:99437551..99439851,2	MCF-7	breast:
2	chr2:99430065..99431888-chr2:99433157..99434960,2	MCF-7	breast:
3	chr2:99434724..99436246-chr2:99444476..99446332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196872	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2090181	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871243	0.87[ASN][1000 genomes]
rs2871244	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731660	0.87[ASN][1000 genomes]
rs4851160	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57185248	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58516468	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58560917	0.83[ASN][1000 genomes]
rs59083513	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59313126	0.81[ASN][1000 genomes]
rs59989465	0.81[ASN][1000 genomes]
rs61042973	0.83[ASN][1000 genomes]
rs61311613	0.87[ASN][1000 genomes]
rs61359279	0.83[ASN][1000 genomes]
rs61402919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6733135	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs72811003	0.85[ASN][1000 genomes]
rs72811004	0.85[ASN][1000 genomes]
rs72811005	0.85[ASN][1000 genomes]
rs72811067	0.81[AMR][1000 genomes]
rs72827726	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827727	0.81[ASN][1000 genomes]
rs72827728	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72827729	0.85[ASN][1000 genomes]
rs72827731	0.85[ASN][1000 genomes]
rs72827732	0.85[ASN][1000 genomes]
rs72827733	0.85[ASN][1000 genomes]
rs72827734	0.83[ASN][1000 genomes]
rs72827736	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827739	0.87[ASN][1000 genomes]
rs72827740	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827741	0.87[ASN][1000 genomes]
rs72827742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827743	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99418000-99442200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99423400-99439200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:99423600-99439200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:99424000-99435600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:99424000-99438400	Weak transcription	Pancreas	Pancrea
6	chr2:99424800-99434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:99426800-99439200	Weak transcription	Gastric	stomach
8	chr2:99427200-99439000	Weak transcription	Aorta	Aorta
9	chr2:99427400-99442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:99427600-99434800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr2:99427600-99437200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr2:99427600-99438000	Weak transcription	Fetal Intestine Large	intestine
13	chr2:99432600-99435200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:99432600-99436400	Weak transcription	Fetal Intestine Small	intestine
15	chr2:99432600-99437000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:99433400-99438200	Weak transcription	Colonic Mucosa	Colon
17	chr2:99434000-99434800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:99434000-99435400	Enhancers	Lung	lung
19	chr2:99434200-99434800	Enhancers	Right Ventricle	heart
20	chr2:99434200-99436200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr2:99434400-99435400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:99434600-99434800	Genic enhancers	Esophagus	oesophagus
23	chr2:99434600-99435200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:99434600-99435200	Enhancers	HUVEC	blood vessel
25	chr2:99434600-99435400	Enhancers	HMEC	breast
26	chr2:99434600-99435800	Enhancers	Left Ventricle	heart
27	chr2:99434600-99436000	Enhancers	Right Atrium	heart
28	chr2:99434600-99436200	Enhancers	Brain Anterior Caudate	brain
29	chr2:99434600-99438200	Weak transcription	Monocytes-CD14+_RO01746	blood

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