Variant report

Variant	rs61402919
Chromosome Location	chr2:99432884-99432885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99219505..99221490-chr2:99431670..99433298,2	K562	blood:
2	chr2:99420757..99423586-chr2:99430934..99433054,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183513	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2090181	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871243	0.87[ASN][1000 genomes]
rs2871244	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731660	0.87[ASN][1000 genomes]
rs4851160	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57185248	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58516468	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58560917	0.83[ASN][1000 genomes]
rs59083513	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59313126	0.81[ASN][1000 genomes]
rs59989465	0.81[ASN][1000 genomes]
rs61042973	0.83[ASN][1000 genomes]
rs61311613	0.87[ASN][1000 genomes]
rs61359279	0.83[ASN][1000 genomes]
rs72811003	0.85[ASN][1000 genomes]
rs72811004	0.85[ASN][1000 genomes]
rs72811005	0.85[ASN][1000 genomes]
rs72811067	0.81[AMR][1000 genomes]
rs72827726	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827727	0.81[ASN][1000 genomes]
rs72827728	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72827729	0.85[ASN][1000 genomes]
rs72827731	0.85[ASN][1000 genomes]
rs72827732	0.85[ASN][1000 genomes]
rs72827733	0.85[ASN][1000 genomes]
rs72827734	0.83[ASN][1000 genomes]
rs72827736	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827739	0.87[ASN][1000 genomes]
rs72827740	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827741	0.87[ASN][1000 genomes]
rs72827742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827743	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99418000-99442200	Weak transcription	Stomach Mucosa	stomach
2	chr2:99423400-99439200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:99423600-99439200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:99423800-99434200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:99424000-99435600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:99424000-99438400	Weak transcription	Pancreas	Pancrea
7	chr2:99424800-99434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:99426800-99439200	Weak transcription	Gastric	stomach
9	chr2:99427200-99439000	Weak transcription	Aorta	Aorta
10	chr2:99427400-99442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:99427600-99434000	Weak transcription	Lung	lung
12	chr2:99427600-99434800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:99427600-99437200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:99427600-99438000	Weak transcription	Fetal Intestine Large	intestine
15	chr2:99432200-99433200	Enhancers	Right Atrium	heart
16	chr2:99432600-99434200	Weak transcription	Right Ventricle	heart
17	chr2:99432600-99434600	Weak transcription	Esophagus	oesophagus
18	chr2:99432600-99435200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:99432600-99436400	Weak transcription	Fetal Intestine Small	intestine
20	chr2:99432600-99437000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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