Variant report

Variant	rs72827732
Chromosome Location	chr2:99403257-99403258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99346491..99349928-chr2:99402977..99407960,4	MCF-7	breast:
2	chr2:99402708..99406014-chr2:99411806..99414792,3	MCF-7	breast:
3	chr2:99402180..99404293-chr2:99406318..99408182,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071073	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10496330	0.86[EUR][1000 genomes]
rs1877905	0.86[EUR][1000 genomes]
rs2090181	0.85[ASN][1000 genomes]
rs2203432	0.85[ASN][1000 genomes]
rs2871243	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2871244	0.85[ASN][1000 genomes]
rs3731660	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4851160	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57185248	0.83[ASN][1000 genomes]
rs58516468	0.83[ASN][1000 genomes]
rs58560917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58676789	0.87[ASN][1000 genomes]
rs59083513	0.85[ASN][1000 genomes]
rs59313126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59989465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60496162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61042973	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61311613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61359279	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61402919	0.85[ASN][1000 genomes]
rs72811003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72811004	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72811005	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72825780	0.86[EUR][1000 genomes]
rs72825782	0.86[EUR][1000 genomes]
rs72825784	0.86[EUR][1000 genomes]
rs72825789	0.86[EUR][1000 genomes]
rs72825790	0.86[EUR][1000 genomes]
rs72825800	0.86[EUR][1000 genomes]
rs72825801	0.86[EUR][1000 genomes]
rs72827704	0.86[EUR][1000 genomes]
rs72827705	0.86[EUR][1000 genomes]
rs72827707	0.86[EUR][1000 genomes]
rs72827708	0.86[EUR][1000 genomes]
rs72827713	0.86[EUR][1000 genomes]
rs72827717	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827722	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827724	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827726	0.83[ASN][1000 genomes]
rs72827727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72827736	0.83[ASN][1000 genomes]
rs72827739	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827740	0.85[ASN][1000 genomes]
rs72827741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827742	0.85[ASN][1000 genomes]
rs72827743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99385800-99410400	Weak transcription	Right Atrium	heart
2	chr2:99391600-99406600	Weak transcription	Thymus	Thymus
3	chr2:99399400-99404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:99401800-99412800	Weak transcription	Gastric	stomach
5	chr2:99403200-99403400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:99403200-99404400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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