Variant report

Variant	rs72827704
Chromosome Location	chr2:99371474-99371475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496330	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877905	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313126	0.86[EUR][1000 genomes]
rs59989465	0.86[EUR][1000 genomes]
rs72825777	0.84[EUR][1000 genomes]
rs72825780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825782	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825784	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825789	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825790	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825800	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827707	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827708	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827717	0.93[EUR][1000 genomes]
rs72827722	0.93[EUR][1000 genomes]
rs72827724	0.93[EUR][1000 genomes]
rs72827727	0.86[EUR][1000 genomes]
rs72827729	0.86[EUR][1000 genomes]
rs72827731	0.86[EUR][1000 genomes]
rs72827732	0.86[EUR][1000 genomes]
rs72827733	0.86[EUR][1000 genomes]
rs72827734	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv520854	chr2:99369757-99373720	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
2	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
3	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:99365200-99372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:99365400-99371600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:99365400-99372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:99365600-99373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:99365800-99374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:99366200-99372200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:99366600-99373200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr2:99367400-99374000	Weak transcription	Esophagus	oesophagus
12	chr2:99369600-99373600	Weak transcription	HUVEC	blood vessel
13	chr2:99370800-99373400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:99371000-99371600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:99371000-99373800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:99371200-99373800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:99371200-99374000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:99371400-99372200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:99371400-99373600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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