Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:99361547..99363646-chr2:99366990..99369948,2	MCF-7	breast:
2	chr2:99367443..99369636-chr2:99372138..99374766,2	MCF-7	breast:
3	chr2:99346543..99348258-chr2:99368411..99371115,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071073	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496330	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877905	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313126	0.86[EUR][1000 genomes]
rs59989465	0.86[EUR][1000 genomes]
rs72825777	0.84[EUR][1000 genomes]
rs72825780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825782	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825784	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825789	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825790	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825800	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827708	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827717	0.93[EUR][1000 genomes]
rs72827722	0.93[EUR][1000 genomes]
rs72827724	0.93[EUR][1000 genomes]
rs72827727	0.86[EUR][1000 genomes]
rs72827729	0.86[EUR][1000 genomes]
rs72827731	0.86[EUR][1000 genomes]
rs72827732	0.86[EUR][1000 genomes]
rs72827733	0.86[EUR][1000 genomes]
rs72827734	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
2	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
3	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:99364800-99371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:99365200-99372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:99365400-99371600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:99365400-99372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:99365600-99373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:99365800-99374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:99366000-99369800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:99366200-99372200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:99366600-99373200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:99367000-99370200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:99367200-99370000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:99367400-99374000	Weak transcription	Esophagus	oesophagus
16	chr2:99368400-99369600	Enhancers	HUVEC	blood vessel
17	chr2:99368800-99370000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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