Variant report

Variant	rs72825777
Chromosome Location	chr2:99322526-99322527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99320303..99322866-chr2:99324363..99327818,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10496330	0.84[EUR][1000 genomes]
rs1877905	0.84[EUR][1000 genomes]
rs72825758	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825760	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825766	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72825768	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72825780	0.84[EUR][1000 genomes]
rs72825782	0.84[EUR][1000 genomes]
rs72825784	0.84[EUR][1000 genomes]
rs72825789	0.84[EUR][1000 genomes]
rs72825790	0.84[EUR][1000 genomes]
rs72825800	0.84[EUR][1000 genomes]
rs72825801	0.84[EUR][1000 genomes]
rs72827704	0.84[EUR][1000 genomes]
rs72827705	0.84[EUR][1000 genomes]
rs72827707	0.84[EUR][1000 genomes]
rs72827708	0.84[EUR][1000 genomes]
rs72827713	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv2841	chr2:99296874-99342362	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99293400-99325200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:99295000-99325200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:99303200-99336400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:99313000-99327000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:99313200-99326600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:99316400-99325000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:99316600-99336400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:99317800-99322800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:99318000-99325200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:99318400-99322800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr2:99319000-99325400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:99319200-99322600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr2:99319200-99323200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:99319200-99324000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:99319200-99325000	Weak transcription	Psoas Muscle	Psoas
16	chr2:99319200-99325400	Weak transcription	Aorta	Aorta
17	chr2:99319200-99325400	Weak transcription	Ovary	ovary
18	chr2:99319200-99336800	Weak transcription	Spleen	Spleen
19	chr2:99319400-99324000	Weak transcription	Brain Substantia Nigra	brain
20	chr2:99319800-99325400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr2:99320200-99325400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:99320400-99324000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:99320400-99325000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:99320400-99325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:99320400-99325400	Weak transcription	Adipose Nuclei	Adipose
26	chr2:99320400-99325600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:99320400-99325800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr2:99320600-99323200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:99320600-99324000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr2:99320600-99325000	Weak transcription	HUVEC	blood vessel
31	chr2:99320600-99325200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:99320600-99325400	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:99320600-99327600	Weak transcription	Thymus	Thymus
34	chr2:99320800-99322800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr2:99320800-99324000	Weak transcription	Colon Smooth Muscle	Colon
36	chr2:99320800-99325400	Weak transcription	Gastric	stomach
37	chr2:99321000-99336200	Weak transcription	Fetal Stomach	stomach
38	chr2:99321200-99324000	Weak transcription	Small Intestine	intestine
39	chr2:99321200-99326000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr2:99321200-99335000	Weak transcription	Lung	lung
41	chr2:99321600-99323400	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:99321600-99336600	Weak transcription	Fetal Kidney	kidney
43	chr2:99321800-99325000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr2:99321800-99325400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr2:99322000-99322800	Weak transcription	Primary T cells from cord blood	blood
46	chr2:99322000-99322800	Enhancers	Duodenum Mucosa	Duodenum
47	chr2:99322000-99322800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr2:99322000-99322800	Enhancers	HepG2	liver
49	chr2:99322000-99323800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr2:99322000-99324000	Weak transcription	Brain Angular Gyrus	brain

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