Variant report

Variant	rs72825800
Chromosome Location	chr2:99363991-99363992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99363918..99365909-chr2:99377187..99378693,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1877905	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59313126	0.86[EUR][1000 genomes]
rs59989465	0.86[EUR][1000 genomes]
rs72825777	0.84[EUR][1000 genomes]
rs72825780	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72825782	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72825784	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72825789	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825790	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72825801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827704	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827705	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827707	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827708	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827713	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72827717	0.93[EUR][1000 genomes]
rs72827722	0.93[EUR][1000 genomes]
rs72827724	0.93[EUR][1000 genomes]
rs72827727	0.86[EUR][1000 genomes]
rs72827729	0.86[EUR][1000 genomes]
rs72827731	0.86[EUR][1000 genomes]
rs72827732	0.86[EUR][1000 genomes]
rs72827733	0.86[EUR][1000 genomes]
rs72827734	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv1002315	chr2:99361475-99368975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99348400-99367000	Weak transcription	Esophagus	oesophagus
2	chr2:99354600-99364600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr2:99354800-99364000	Weak transcription	Dnd41	blood
4	chr2:99359600-99364200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:99359600-99364400	Weak transcription	Placenta	Placenta
6	chr2:99359600-99364400	Weak transcription	Spleen	Spleen
7	chr2:99359600-99367200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
9	chr2:99361200-99364200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:99361200-99364200	Weak transcription	Fetal Thymus	thymus
11	chr2:99361200-99365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:99361400-99364400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:99361400-99364400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:99361400-99364400	Weak transcription	HMEC	breast
15	chr2:99361400-99365400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:99361400-99365600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
18	chr2:99361600-99364400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:99362200-99364200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:99362400-99364000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:99362400-99364000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:99362400-99364000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr2:99362400-99364200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:99362400-99365200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
26	chr2:99362600-99364200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr2:99362600-99364200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr2:99362800-99364200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:99363400-99366000	Enhancers	Primary T helper cells PMA-I stimulated	--

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