Variant report

Variant	rs220882
Chromosome Location	chr6:15826170-15826171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15825711..15828125-chr6:16131574..16133261,2	K562	blood:
2	chr6:15825494..15828253-chr6:15836112..15838842,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs117348	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs16877087	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs220884	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs220932	0.81[EUR][1000 genomes]
rs220933	0.90[ASN][1000 genomes]
rs220934	0.83[EUR][1000 genomes]
rs220936	0.83[ASN][1000 genomes]
rs220937	0.83[ASN][1000 genomes]
rs220939	0.83[EUR][1000 genomes]
rs220940	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs367112	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs375952	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs407108	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs410130	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs424417	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs439051	0.91[ASN][1000 genomes]
rs440691	0.91[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs444502	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs444859	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs445004	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs448388	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs448552	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4486015	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs509265	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs509288	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs523848	0.86[CEU][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs524605	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9383080	0.91[CEU][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs9476952	0.82[EUR][1000 genomes]
rs9476953	0.83[EUR][1000 genomes]
rs9476954	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970653	chr6:15826001-15833990	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs220882	TBC1D7	cis	cerebellum	SCAN
rs220882	RBM24	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15824200-15826800	Weak transcription	K562	blood
2	chr6:15824200-15828000	Weak transcription	Fetal Heart	heart
3	chr6:15825800-15842800	Weak transcription	Right Atrium	heart
4	chr6:15826000-15826600	Enhancers	Fetal Brain Male	brain

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