Variant report

Variant	rs444859
Chromosome Location	chr6:15822366-15822367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15821576..15823790-chr6:16129279..16131312,2	K562	blood:
2	chr6:15802544..15804608-chr6:15821645..15824118,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs117348	0.85[CHB][hapmap]
rs16877087	0.94[EUR][1000 genomes]
rs220882	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220883	0.80[AMR][1000 genomes]
rs220884	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs220932	0.80[EUR][1000 genomes]
rs220934	0.82[EUR][1000 genomes]
rs220939	0.83[EUR][1000 genomes]
rs220940	0.86[CHB][hapmap]
rs367112	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs375952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs410130	0.86[CHB][hapmap]
rs412540	0.81[AMR][1000 genomes]
rs424417	0.90[CHB][hapmap]
rs439051	0.82[AMR][1000 genomes]
rs440691	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs444502	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs445004	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs448388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs448552	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486015	0.86[CHB][hapmap]
rs509265	0.86[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs509288	0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs522264	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs523848	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs524605	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383080	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs9476952	0.82[EUR][1000 genomes]
rs9476953	0.83[EUR][1000 genomes]
rs9476954	0.83[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15821400-15823800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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