Variant report

Variant	rs220939
Chromosome Location	chr6:15841345-15841346
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16877087	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220882	0.83[EUR][1000 genomes]
rs220932	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220934	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs375952	0.83[EUR][1000 genomes]
rs407108	0.82[EUR][1000 genomes]
rs444859	0.83[EUR][1000 genomes]
rs448388	0.83[EUR][1000 genomes]
rs448552	0.83[EUR][1000 genomes]
rs523848	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs524605	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs528312	0.90[ASN][1000 genomes]
rs9370836	0.81[ASN][1000 genomes]
rs9383080	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476952	0.90[ASN][1000 genomes]
rs9476953	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476954	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476959	0.83[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15825800-15842800	Weak transcription	Right Atrium	heart
2	chr6:15837600-15843800	Weak transcription	K562	blood
3	chr6:15840600-15842200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:15840600-15844000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:15840600-15845200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:15841000-15842800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:15841000-15845400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:15841200-15845600	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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