Variant report

Variant	rs407108
Chromosome Location	chr6:15823804-15823805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15822836..15825669-chr6:15827542..15830932,3	MCF-7	breast:
2	chr6:15823438..15825544-chr6:15836442..15838890,2	K562	blood:
3	chr6:15802544..15804608-chr6:15821645..15824118,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs117348	0.87[CHB][hapmap]
rs16877087	0.94[EUR][1000 genomes]
rs220882	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs220883	0.80[AMR][1000 genomes]
rs220884	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs220934	0.82[EUR][1000 genomes]
rs220939	0.82[EUR][1000 genomes]
rs220940	0.91[CHB][hapmap]
rs367112	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs375952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs410130	0.91[CHB][hapmap]
rs412540	0.81[AMR][1000 genomes]
rs424417	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs439051	0.82[AMR][1000 genomes]
rs440691	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs444502	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs444859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445004	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs448388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448552	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486015	0.91[CHB][hapmap]
rs509265	0.91[CHB][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs509288	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs522264	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs523848	0.86[CEU][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs524605	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383080	0.91[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs9476952	0.81[EUR][1000 genomes]
rs9476953	0.82[EUR][1000 genomes]
rs9476954	0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs407108	TBC1D7	cis	cerebellum	SCAN
rs407108	RBM24	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15823600-15824200	Enhancers	Fetal Heart	heart
2	chr6:15823600-15825400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:15823800-15824000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:15823800-15824200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:15823800-15824200	Enhancers	K562	blood
6	chr6:15823800-15825000	Enhancers	GM12878-XiMat	blood

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