Variant report

Variant	rs2224707
Chromosome Location	chr6:118234005-118234006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1160428	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1323101	0.86[EUR][1000 genomes]
rs1980748	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2211098	0.85[EUR][1000 genomes]
rs2760240	0.82[ASN][1000 genomes]
rs2789013	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs912088	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv522455	chr6:118228527-118240685	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118229800-118241400	Weak transcription	Gastric	stomach
2	chr6:118230800-118236400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:118230800-118238000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118230800-118239400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:118232000-118238000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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