Variant report

Variant	rs1160428
Chromosome Location	chr6:118251908-118251909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10457323	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10457324	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10499084	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12203409	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1323100	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1323101	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338975	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361288	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1416416	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1416418	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416420	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416421	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416422	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1570447	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1980748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998458	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2139048	0.85[AMR][1000 genomes]
rs2211098	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2224707	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2355792	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2760240	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2789010	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2789013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946304	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6568991	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6903073	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6935834	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6937496	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775647	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs912088	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9320624	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9372488	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9374685	0.85[AMR][1000 genomes]
rs9374691	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9385024	0.87[AMR][1000 genomes]
rs9387517	0.85[AMR][1000 genomes]
rs9387518	0.85[AMR][1000 genomes]
rs9387531	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9398465	0.85[AMR][1000 genomes]
rs9398468	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs959714	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs982647	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118251200-118252400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118251400-118252000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:118251400-118252000	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:118251600-118252200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118251600-118252200	Enhancers	Brain Angular Gyrus	brain

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