Variant report

Variant	rs1361288
Chromosome Location	chr6:118242993-118242994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11153710	0.87[CHB][hapmap]
rs1160428	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11754631	0.81[CHB][hapmap]
rs1323101	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1338968	0.95[CEU][hapmap]
rs1338974	0.92[CHB][hapmap]
rs1416416	0.84[CEU][hapmap]
rs1416417	0.87[CHB][hapmap]
rs1416419	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs1416420	0.84[CEU][hapmap]
rs1416421	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs1416422	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs1538455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1570447	0.84[CEU][hapmap]
rs1980748	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1998458	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs2211098	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2760240	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2789010	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs2789013	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6568991	0.84[CEU][hapmap]
rs6903073	0.84[CEU][hapmap]
rs6935834	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738597	0.87[CHB][hapmap];0.85[CHD][hapmap]
rs7775647	0.84[CEU][hapmap]
rs912088	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap]
rs9374691	0.83[CEU][hapmap]
rs9401037	0.80[ASN][1000 genomes]
rs959714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs982647	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118242000-118243200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118242000-118243400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:118242000-118249800	Weak transcription	Fetal Brain Male	brain
4	chr6:118242400-118243000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr6:118242400-118247600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:118242600-118243200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118242600-118243200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:118242800-118251400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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