Variant report

Variant	rs11754631
Chromosome Location	chr6:118271014-118271015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10457323	0.82[ASN][1000 genomes]
rs10499084	0.83[JPT][hapmap]
rs11153710	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12206792	0.89[JPT][hapmap]
rs1338968	0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1338974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1338975	0.86[ASN][1000 genomes]
rs1361288	0.81[CHB][hapmap]
rs1416413	0.93[ASW][hapmap];0.83[YRI][hapmap]
rs1416416	0.92[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416417	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1416418	0.86[ASN][1000 genomes]
rs1416419	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416420	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416421	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1416422	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1538455	0.81[CHB][hapmap]
rs1538456	0.83[YRI][hapmap]
rs1570447	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1998458	0.93[CHB][hapmap]
rs2211098	0.85[CHB][hapmap]
rs2355792	0.86[ASN][1000 genomes]
rs2760240	0.85[CHB][hapmap]
rs2789010	0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2789013	0.86[CHB][hapmap]
rs4946304	0.87[ASN][1000 genomes]
rs4946305	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6568991	0.93[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6903073	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6935283	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738597	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7775647	0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs912088	0.86[CHB][hapmap]
rs9320624	0.82[ASN][1000 genomes]
rs9372488	0.84[JPT][hapmap]
rs9374691	0.92[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9385027	0.94[JPT][hapmap]
rs9387524	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9387527	0.93[ASW][hapmap];0.83[YRI][hapmap]
rs9387535	0.89[JPT][hapmap]
rs9401037	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401040	1.00[JPT][hapmap]
rs9401044	0.89[JPT][hapmap]
rs9401046	0.87[JPT][hapmap]
rs9489295	0.89[JPT][hapmap]
rs982647	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:118267200-118272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:118267200-118273000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:118268800-118271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:118268800-118272400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:118269000-118271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:118269000-118272000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:118271000-118272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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