Variant report

Variant	rs4946304
Chromosome Location	chr6:118272599-118272600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10457323	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457324	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10499084	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872160	0.80[ASN][1000 genomes]
rs10872161	0.80[ASN][1000 genomes]
rs1160428	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11754631	0.87[ASN][1000 genomes]
rs12203409	0.87[AMR][1000 genomes]
rs12206792	0.80[ASN][1000 genomes]
rs12212649	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12212953	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12214395	0.80[ASN][1000 genomes]
rs1323100	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1323101	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1338968	0.80[ASN][1000 genomes]
rs1338975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416416	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416418	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416419	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416420	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416421	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416422	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1570447	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980748	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1998458	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2139048	0.87[AMR][1000 genomes]
rs2211098	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2355792	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2760240	0.85[AMR][1000 genomes]
rs2789010	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2789013	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6568991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903073	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937496	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7775647	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912088	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9320624	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9372488	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9374685	0.87[AMR][1000 genomes]
rs9374691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385024	0.85[AMR][1000 genomes]
rs9385027	0.80[ASN][1000 genomes]
rs9385028	0.80[ASN][1000 genomes]
rs9387517	0.87[AMR][1000 genomes]
rs9387518	0.87[AMR][1000 genomes]
rs9387524	0.93[ASN][1000 genomes]
rs9387531	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9387535	0.80[ASN][1000 genomes]
rs9398465	0.87[AMR][1000 genomes]
rs9398468	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401040	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9401044	0.80[ASN][1000 genomes]
rs9489295	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118267200-118272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:118267200-118273000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:118271000-118272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118271200-118274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:118271600-118274000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118271600-118274400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:118271800-118272800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:118272000-118273600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:118272000-118274200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:118272200-118272800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:118272200-118273600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:118272400-118272800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:118272400-118273400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:118272400-118273600	Enhancers	Fetal Brain Male	brain
16	chr6:118272400-118273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:118272400-118273800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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