Variant report

Variant	rs2789013
Chromosome Location	chr6:118245925-118245926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10457323	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10457324	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10499084	0.94[CEU][hapmap];1.00[GIH][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1160428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11754631	0.86[CHB][hapmap]
rs12203409	0.85[AMR][1000 genomes]
rs12206792	0.88[CEU][hapmap]
rs1323100	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1323101	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1338974	0.92[CHB][hapmap]
rs1338975	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361288	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1416416	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1416418	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416419	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416420	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416421	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416422	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1538455	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1570447	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1980748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998458	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2139048	0.85[AMR][1000 genomes]
rs2211098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2224707	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2355792	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2760240	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2789010	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4946304	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6568991	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6903073	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6935834	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6937496	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775647	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs912088	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9320623	0.83[GIH][hapmap]
rs9320624	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9372488	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9374685	0.85[AMR][1000 genomes]
rs9374691	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9385024	0.87[AMR][1000 genomes]
rs9385027	0.88[CEU][hapmap]
rs9387517	0.85[AMR][1000 genomes]
rs9387518	0.85[AMR][1000 genomes]
rs9387531	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9387535	0.88[CEU][hapmap]
rs9398465	0.85[AMR][1000 genomes]
rs9398468	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9401040	0.93[CEU][hapmap]
rs9401044	0.94[CEU][hapmap]
rs9401046	0.86[CEU][hapmap]
rs9489283	0.86[YRI][hapmap]
rs9489295	0.88[CEU][hapmap]
rs959714	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs982647	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3397134	chr6:118243259-118247457	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3442851	chr6:118243909-118246107	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118242000-118249800	Weak transcription	Fetal Brain Male	brain
2	chr6:118242400-118247600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118242800-118251400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118243200-118248600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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