Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11153710	0.88[CHB][hapmap]
rs11754631	0.81[CHB][hapmap]
rs1323101	0.89[ASN][1000 genomes]
rs1338968	0.95[CEU][hapmap]
rs1338974	0.93[CHB][hapmap]
rs1361288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1416416	0.84[CEU][hapmap]
rs1416417	0.88[CHB][hapmap]
rs1416419	0.84[CEU][hapmap]
rs1416420	0.84[CEU][hapmap]
rs1416421	0.84[CEU][hapmap]
rs1416422	0.83[CEU][hapmap]
rs1570447	0.84[CEU][hapmap]
rs1998458	0.84[CEU][hapmap]
rs2211098	0.83[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2760240	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2789010	0.84[CEU][hapmap]
rs2789013	0.84[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs6568991	0.84[CEU][hapmap]
rs6903073	0.84[CEU][hapmap]
rs6935834	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7738597	0.87[CHB][hapmap]
rs7775647	0.84[CEU][hapmap]
rs912088	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9374691	0.83[CEU][hapmap]
rs959714	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs982647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118252000-118254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118252000-118254800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:118252200-118254400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:118252200-118255000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118252400-118252800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:118252400-118252800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:118252400-118254400	Weak transcription	Brain Hippocampus Middle	brain

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