Variant report

Variant	rs1338974
Chromosome Location	chr6:118270518-118270519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10499084	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11153710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12206792	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12664850	0.82[AFR][1000 genomes]
rs1323100	0.81[ASN][1000 genomes]
rs1361288	0.92[CHB][hapmap]
rs1416413	0.82[AFR][1000 genomes]
rs1416416	1.00[CHB][hapmap]
rs1416417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416419	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1416420	0.93[CHB][hapmap]
rs1416421	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1416422	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1538455	0.93[CHB][hapmap]
rs1538456	0.82[AFR][1000 genomes]
rs1570447	0.93[CHB][hapmap]
rs1998458	1.00[CHB][hapmap]
rs2211098	0.93[CHB][hapmap]
rs2760240	0.93[CHB][hapmap]
rs2789010	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2789013	0.92[CHB][hapmap]
rs4946305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946309	0.82[AFR][1000 genomes]
rs6568991	1.00[CHB][hapmap]
rs6903073	1.00[CHB][hapmap]
rs6935283	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937496	0.88[ASN][1000 genomes]
rs7738597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742998	0.80[AFR][1000 genomes]
rs7775647	1.00[CHB][hapmap]
rs912088	0.92[CHB][hapmap]
rs9320621	0.81[AFR][1000 genomes]
rs9372488	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs9374691	1.00[CHB][hapmap]
rs9385027	0.81[JPT][hapmap]
rs9387524	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9387527	0.82[AFR][1000 genomes]
rs9387531	0.81[ASN][1000 genomes]
rs9387535	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs9398468	0.85[ASN][1000 genomes]
rs9401037	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9401039	0.82[AFR][1000 genomes]
rs9401040	0.86[JPT][hapmap]
rs9401044	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9401046	0.84[CHB][hapmap]
rs9401051	0.85[CHB][hapmap]
rs9489295	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs982647	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:118267200-118271000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118267200-118272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:118267200-118273000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:118268800-118271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118268800-118272400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:118269000-118271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:118269000-118272000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:118269800-118270800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain

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