Variant report

Variant	rs9401051
Chromosome Location	chr6:118366738-118366739
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10499084	0.86[CHB][hapmap]
rs11153713	0.94[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153717	0.88[CEU][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11153718	0.88[CEU][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12190596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12191412	0.82[EUR][1000 genomes]
rs12206104	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12206584	0.80[EUR][1000 genomes]
rs12206792	0.86[CHB][hapmap]
rs12207545	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12208166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208433	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs12213071	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1338974	0.85[CHB][hapmap]
rs1416417	0.80[CHB][hapmap]
rs4132664	0.81[CEU][hapmap]
rs4245492	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4283912	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs4373391	0.81[CEU][hapmap]
rs4479971	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs6900812	0.80[EUR][1000 genomes]
rs7756527	0.87[CHB][hapmap]
rs9320626	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9320627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9320629	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs9320634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320635	0.82[EUR][1000 genomes]
rs9320636	0.82[EUR][1000 genomes]
rs9320637	0.82[EUR][1000 genomes]
rs9372488	0.87[CHB][hapmap]
rs9372494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374700	0.82[CEU][hapmap]
rs9374704	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9374708	0.82[EUR][1000 genomes]
rs9374709	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9374711	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9385027	0.81[CHB][hapmap]
rs9385029	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9387535	0.86[CHB][hapmap]
rs9387537	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387547	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9387550	0.82[EUR][1000 genomes]
rs9398475	0.87[EUR][1000 genomes]
rs9398476	0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398477	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs9401040	0.81[CHB][hapmap]
rs9401044	0.86[CHB][hapmap]
rs9401046	0.81[CHB][hapmap]
rs9401049	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401050	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401052	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs9401053	0.82[EUR][1000 genomes]
rs9489295	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118365800-118375400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118366600-118366800	Enhancers	Spleen	Spleen

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