Variant report

Variant	rs9387547
Chromosome Location	chr6:118375027-118375028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11153713	0.93[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11153717	0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs11153718	0.87[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12190596	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191412	0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12206104	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12206584	0.81[EUR][1000 genomes]
rs12207545	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12208166	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208433	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs12213071	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs1547754	0.81[JPT][hapmap]
rs4132664	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs4245492	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs4283912	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4373391	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs4479971	0.94[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs9320626	0.80[EUR][1000 genomes]
rs9320627	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320629	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs9320634	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320635	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9320636	0.83[EUR][1000 genomes]
rs9320637	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9372494	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374700	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9374704	0.87[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374708	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374709	0.88[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374711	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385029	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387537	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9387550	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398474	0.83[JPT][hapmap]
rs9398475	0.85[EUR][1000 genomes]
rs9398476	0.93[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398477	0.87[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs9401040	0.81[CHB][hapmap]
rs9401047	0.82[JPT][hapmap]
rs9401049	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401050	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9401051	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401052	0.94[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9401053	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118365800-118375400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118372800-118377800	Weak transcription	Brain Germinal Matrix	brain

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