Variant report

Variant	rs12206584
Chromosome Location	chr6:118417193-118417194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118415452..118418143-chr6:118419953..118422521,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11153721	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12190596	0.81[EUR][1000 genomes]
rs12194270	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12203615	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12204646	0.86[ASN][1000 genomes]
rs12206104	0.89[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12207545	0.80[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208166	0.80[EUR][1000 genomes]
rs12208433	0.86[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12209804	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12213071	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs129630	0.90[JPT][hapmap]
rs205959	0.94[JPT][hapmap]
rs205962	0.95[JPT][hapmap]
rs205965	0.84[JPT][hapmap]
rs205968	0.95[JPT][hapmap]
rs205971	0.95[JPT][hapmap]
rs4073802	0.86[AFR][1000 genomes]
rs427474	0.94[JPT][hapmap]
rs4283912	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4360162	0.94[JPT][hapmap]
rs4470879	0.81[AFR][1000 genomes]
rs4537173	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs60967336	0.87[AFR][1000 genomes]
rs6900050	0.81[AFR][1000 genomes]
rs7756527	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9320634	0.80[EUR][1000 genomes]
rs9320640	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs9320641	0.87[ASN][1000 genomes]
rs9372494	0.80[EUR][1000 genomes]
rs9374711	0.81[EUR][1000 genomes]
rs9385029	0.81[EUR][1000 genomes]
rs9387547	0.81[EUR][1000 genomes]
rs9387554	0.94[AFR][1000 genomes]
rs9387555	0.92[AFR][1000 genomes]
rs9387558	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9387559	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9387560	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9401051	0.80[EUR][1000 genomes]
rs9401058	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118414600-118420600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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