Variant report

Variant	rs12207545
Chromosome Location	chr6:118399726-118399727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118394058..118396690-chr6:118398500..118400691,2	K562	blood:
2	chr6:118393977..118396516-chr6:118398556..118400691,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11153713	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs11153717	0.93[CEU][hapmap]
rs11153718	0.93[CEU][hapmap]
rs11153721	0.83[JPT][hapmap]
rs12190596	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191412	0.81[CEU][hapmap]
rs12194270	0.84[JPT][hapmap]
rs12203615	0.83[JPT][hapmap]
rs12206104	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12206584	0.80[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208166	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12208433	0.94[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12209804	0.84[JPT][hapmap]
rs12213071	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs129630	0.84[JPT][hapmap]
rs1547754	0.80[CEU][hapmap]
rs205959	0.83[JPT][hapmap]
rs205962	0.84[JPT][hapmap]
rs205968	0.84[JPT][hapmap]
rs205971	0.84[JPT][hapmap]
rs4132664	0.86[CEU][hapmap]
rs4245492	0.85[CEU][hapmap]
rs427474	0.84[JPT][hapmap]
rs4283912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4360162	0.80[JPT][hapmap]
rs4373391	0.86[CEU][hapmap]
rs4479971	1.00[CEU][hapmap]
rs7756527	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9320627	0.83[EUR][1000 genomes]
rs9320629	0.93[CEU][hapmap]
rs9320634	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9372494	0.86[EUR][1000 genomes]
rs9374700	0.87[CEU][hapmap]
rs9374704	0.93[CEU][hapmap]
rs9374709	0.94[CEU][hapmap]
rs9374711	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9385029	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9387537	0.82[EUR][1000 genomes]
rs9387547	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9387559	0.84[JPT][hapmap]
rs9387560	0.84[JPT][hapmap]
rs9398474	0.81[CEU][hapmap]
rs9398476	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs9398477	0.93[CEU][hapmap]
rs9401040	0.87[CHB][hapmap]
rs9401047	0.81[CEU][hapmap]
rs9401049	0.83[EUR][1000 genomes]
rs9401051	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9401052	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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