Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11153713	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12190596	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12206104	0.83[EUR][1000 genomes]
rs12207545	0.82[EUR][1000 genomes]
rs12208166	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4132664	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4245492	0.86[EUR][1000 genomes]
rs4283912	0.82[EUR][1000 genomes]
rs4373391	0.82[EUR][1000 genomes]
rs4945608	0.81[EUR][1000 genomes]
rs6900812	0.86[EUR][1000 genomes]
rs9320626	0.86[EUR][1000 genomes]
rs9320627	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9320628	0.83[EUR][1000 genomes]
rs9320629	0.83[EUR][1000 genomes]
rs9320630	0.83[EUR][1000 genomes]
rs9320634	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9372494	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374700	0.85[EUR][1000 genomes]
rs9374711	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385029	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9387539	0.83[EUR][1000 genomes]
rs9387547	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398475	0.93[EUR][1000 genomes]
rs9398476	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398477	0.86[EUR][1000 genomes]
rs9401049	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401050	0.81[EUR][1000 genomes]
rs9401051	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9387537	MICAL3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118338600-118341400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:118338800-118344400	Weak transcription	Fetal Brain Female	brain
3	chr6:118338800-118352400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118339000-118347200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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