Variant report

Variant	rs9374700
Chromosome Location	chr6:118345735-118345736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11153713	0.90[CEU][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs11153717	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs11153718	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs12190596	0.89[CEU][hapmap]
rs12191412	0.86[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs12207545	0.87[CEU][hapmap]
rs1547754	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4132664	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4245492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4373391	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4479971	0.95[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs4945607	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945608	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6900812	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7738379	0.83[EUR][1000 genomes]
rs9320626	0.98[EUR][1000 genomes]
rs9320627	0.85[EUR][1000 genomes]
rs9320628	0.94[EUR][1000 genomes]
rs9320629	0.95[CEU][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes]
rs9320630	0.94[EUR][1000 genomes]
rs9320634	0.84[CEU][hapmap]
rs9320635	0.88[EUR][1000 genomes]
rs9320636	0.88[EUR][1000 genomes]
rs9320637	0.88[EUR][1000 genomes]
rs9374704	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9374708	0.88[EUR][1000 genomes]
rs9374709	0.95[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs9374711	0.82[CEU][hapmap]
rs9387537	0.85[EUR][1000 genomes]
rs9387539	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9387547	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9387550	0.88[EUR][1000 genomes]
rs9398474	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398475	0.82[ASN][1000 genomes]
rs9398476	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9398477	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs9401047	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401049	0.85[EUR][1000 genomes]
rs9401050	0.93[EUR][1000 genomes]
rs9401051	0.82[CEU][hapmap]
rs9401052	0.95[CEU][hapmap];0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs9401053	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118338800-118352400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118339000-118347200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118343400-118354800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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