Variant report

Variant	rs9401047
Chromosome Location	chr6:118338374-118338375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11153713	0.86[CEU][hapmap];0.83[JPT][hapmap]
rs11153717	0.90[CEU][hapmap];0.80[CHB][hapmap];0.88[EUR][1000 genomes]
rs11153718	0.90[CEU][hapmap];0.80[CHB][hapmap];0.88[EUR][1000 genomes]
rs12190596	0.84[CEU][hapmap]
rs12191412	0.82[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs12207545	0.81[CEU][hapmap]
rs1547754	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4132664	0.95[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]
rs4245492	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373391	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4479971	0.91[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs4945607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945608	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6900812	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738379	0.82[EUR][1000 genomes]
rs9320626	0.89[EUR][1000 genomes]
rs9320628	0.92[EUR][1000 genomes]
rs9320629	0.91[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs9320630	0.92[EUR][1000 genomes]
rs9320634	0.81[CEU][hapmap]
rs9320635	0.86[EUR][1000 genomes]
rs9320636	0.86[EUR][1000 genomes]
rs9320637	0.86[EUR][1000 genomes]
rs9374700	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374704	0.90[CEU][hapmap];0.80[CHB][hapmap];0.86[EUR][1000 genomes]
rs9374708	0.86[EUR][1000 genomes]
rs9374709	0.91[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs9387539	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9387547	0.82[JPT][hapmap]
rs9387550	0.86[EUR][1000 genomes]
rs9398474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398475	0.81[EUR][1000 genomes]
rs9398476	0.86[CEU][hapmap]
rs9398477	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9401050	0.84[EUR][1000 genomes]
rs9401052	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9401053	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118335200-118338400	Weak transcription	Brain Anterior Caudate	brain
2	chr6:118337600-118339000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:118337800-118338400	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:118338200-118338800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118338200-118338800	Enhancers	Fetal Brain Female	brain
6	chr6:118338200-118339000	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links