Variant report

Variant	rs1547754
Chromosome Location	chr6:118334868-118334869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118334788..118337364-chr6:118342018..118344547,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11153713	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs11153717	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11153718	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs12190596	0.83[CEU][hapmap]
rs12191412	0.81[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs12207545	0.80[CEU][hapmap]
rs4132664	0.95[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs4245492	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373391	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4479971	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs4945607	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945608	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6900812	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9320626	0.90[EUR][1000 genomes]
rs9320628	0.86[EUR][1000 genomes]
rs9320629	0.90[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs9320630	0.86[EUR][1000 genomes]
rs9320634	0.81[CEU][hapmap]
rs9320635	0.80[EUR][1000 genomes]
rs9320636	0.80[EUR][1000 genomes]
rs9320637	0.80[EUR][1000 genomes]
rs9374700	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374704	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs9374708	0.80[EUR][1000 genomes]
rs9374709	0.90[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs9387539	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9387547	0.81[JPT][hapmap]
rs9387550	0.80[EUR][1000 genomes]
rs9398474	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398475	0.82[EUR][1000 genomes]
rs9398476	0.86[CEU][hapmap];0.80[MEX][hapmap]
rs9398477	0.90[CEU][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs9401047	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401050	0.85[EUR][1000 genomes]
rs9401052	0.90[CEU][hapmap];0.84[CHB][hapmap];0.80[EUR][1000 genomes]
rs9401053	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118332600-118335800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118332800-118335000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:118333400-118335200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:118333600-118335200	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:118333600-118335600	Enhancers	Brain Hippocampus Middle	brain
6	chr6:118333800-118335000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:118333800-118335200	Enhancers	Brain Angular Gyrus	brain
8	chr6:118334400-118335000	Enhancers	Fetal Brain Female	brain
9	chr6:118334600-118335200	Enhancers	Brain Anterior Caudate	brain
10	chr6:118334800-118335000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:118334800-118338200	Weak transcription	Brain Germinal Matrix	brain

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