Variant report

Variant	rs12213071
Chromosome Location	chr6:118401119-118401120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11153713	0.85[CEU][hapmap]
rs11153717	0.80[CEU][hapmap]
rs11153718	0.80[CEU][hapmap]
rs11153721	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12190596	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs12191412	0.81[CEU][hapmap]
rs12194270	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12203615	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs12204646	0.83[ASN][1000 genomes]
rs12206104	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206584	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12207545	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208166	0.82[EUR][1000 genomes]
rs12208433	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12209804	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs129630	0.84[JPT][hapmap]
rs205959	0.88[JPT][hapmap]
rs205962	0.89[JPT][hapmap]
rs205968	0.89[JPT][hapmap]
rs205971	0.89[JPT][hapmap]
rs427474	0.89[JPT][hapmap]
rs4283912	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4360162	0.86[JPT][hapmap]
rs4479971	0.86[CEU][hapmap]
rs4537173	0.88[YRI][hapmap]
rs7756527	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9320629	0.85[CEU][hapmap]
rs9320634	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9320640	0.80[YRI][hapmap]
rs9320641	0.84[ASN][1000 genomes]
rs9372494	0.82[EUR][1000 genomes]
rs9374704	0.80[CEU][hapmap]
rs9374709	0.81[CEU][hapmap]
rs9374711	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9385029	0.84[EUR][1000 genomes]
rs9387547	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9387558	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9387559	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9387560	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9398476	0.81[CEU][hapmap]
rs9398477	0.80[CEU][hapmap]
rs9401051	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs9401052	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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