Variant report

Variant	rs7756527
Chromosome Location	chr6:118402320-118402321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12190596	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs12206104	0.94[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12206584	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12207545	0.86[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12208433	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12213071	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338968	0.82[CHB][hapmap]
rs4283912	0.90[CEU][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4373391	0.82[MEX][hapmap];0.81[TSI][hapmap]
rs4546521	0.85[JPT][hapmap]
rs9320634	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs9372494	0.81[CHB][hapmap]
rs9374711	0.82[CEU][hapmap]
rs9401051	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118402200-118404200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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