Variant report

Variant	rs9387535
Chromosome Location	chr6:118330223-118330224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10457323	0.86[ASN][1000 genomes]
rs10457324	0.84[ASN][1000 genomes]
rs10499084	0.94[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs10872160	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872161	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153710	0.84[JPT][hapmap]
rs11153713	0.80[CHB][hapmap]
rs11754631	0.89[JPT][hapmap]
rs12199369	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206792	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212649	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212953	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214395	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338968	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1338974	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs1416416	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1416417	0.84[JPT][hapmap]
rs1416419	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs1416420	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1416421	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs1416422	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1570447	0.88[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1998458	0.88[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap]
rs2211098	0.87[CEU][hapmap]
rs2760240	0.82[CEU][hapmap]
rs2789010	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2789013	0.88[CEU][hapmap]
rs4946304	0.80[ASN][1000 genomes]
rs6568991	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6903073	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7738597	0.84[JPT][hapmap]
rs7775647	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs912088	0.82[CEU][hapmap]
rs9320624	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372488	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs9372494	0.81[CHB][hapmap]
rs9374691	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9385027	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385028	0.81[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398476	0.82[CHB][hapmap]
rs9401040	0.93[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401044	0.93[ASW][hapmap];0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401051	0.86[CHB][hapmap]
rs9481757	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9489295	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118323400-118332800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118324600-118332000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118324800-118332600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:118329600-118332800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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