Variant report

Variant	rs2211098
Chromosome Location	chr6:118245702-118245703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10457323	0.84[EUR][1000 genomes]
rs10457324	0.84[EUR][1000 genomes]
rs10499084	0.93[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs11153710	0.86[CHB][hapmap]
rs1160428	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11754631	0.85[CHB][hapmap]
rs12206792	0.87[CEU][hapmap]
rs1323100	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1323101	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338974	0.93[CHB][hapmap]
rs1338975	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1361288	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1416416	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1416417	0.86[CHB][hapmap]
rs1416418	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1416419	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1416420	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1416421	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1416422	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[EUR][1000 genomes]
rs1538455	0.83[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1570447	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs1980748	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1998458	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2224707	0.85[EUR][1000 genomes]
rs2355792	0.81[EUR][1000 genomes]
rs2760240	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2789010	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2789013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4946304	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6568991	1.00[CEU][hapmap];0.93[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6903073	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes]
rs6935834	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6937496	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7738597	0.84[CHB][hapmap]
rs7775647	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[EUR][1000 genomes]
rs912088	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9320624	0.83[EUR][1000 genomes]
rs9372488	0.93[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs9374691	1.00[CEU][hapmap];0.92[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9385027	0.87[CEU][hapmap]
rs9387531	0.84[EUR][1000 genomes]
rs9387535	0.87[CEU][hapmap]
rs9398468	0.84[EUR][1000 genomes]
rs9401040	0.92[CEU][hapmap]
rs9401044	0.93[CEU][hapmap]
rs9401046	0.84[CEU][hapmap]
rs9489295	0.87[CEU][hapmap]
rs959714	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs982647	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3397134	chr6:118243259-118247457	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3442851	chr6:118243909-118246107	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118242000-118249800	Weak transcription	Fetal Brain Male	brain
2	chr6:118242400-118247600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118242800-118251400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118243200-118248600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links