Variant report

Variant	rs9398468
Chromosome Location	chr6:118292304-118292305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10457323	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10457324	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499084	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872160	0.81[EUR][1000 genomes]
rs10872161	0.81[EUR][1000 genomes]
rs11153710	0.85[ASN][1000 genomes]
rs1160428	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12199369	0.83[EUR][1000 genomes]
rs12203409	0.82[AMR][1000 genomes]
rs12206792	0.80[EUR][1000 genomes]
rs12212649	0.88[EUR][1000 genomes]
rs12212953	0.85[EUR][1000 genomes]
rs1323100	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1323101	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1338968	0.81[AMR][1000 genomes]
rs1338974	0.85[ASN][1000 genomes]
rs1338975	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416416	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416417	0.85[ASN][1000 genomes]
rs1416418	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416419	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416420	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416421	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416422	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570447	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1980748	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1998458	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2139048	0.82[AMR][1000 genomes]
rs2211098	0.84[EUR][1000 genomes]
rs2355792	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2760240	0.80[AMR][1000 genomes]
rs2789010	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2789013	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4946304	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4946305	0.85[ASN][1000 genomes]
rs6568991	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6903073	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6935283	0.84[ASN][1000 genomes]
rs6937496	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7738597	0.85[ASN][1000 genomes]
rs7775647	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs912088	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9320624	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374685	0.82[AMR][1000 genomes]
rs9374691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9385024	0.80[AMR][1000 genomes]
rs9385027	0.80[EUR][1000 genomes]
rs9385028	0.80[EUR][1000 genomes]
rs9387517	0.82[AMR][1000 genomes]
rs9387518	0.82[AMR][1000 genomes]
rs9387531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398465	0.82[AMR][1000 genomes]
rs9401040	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401044	0.81[EUR][1000 genomes]
rs9401046	0.80[EUR][1000 genomes]
rs9489295	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118286600-118301200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118286800-118292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:118291400-118293800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr6:118291800-118293200	ZNF genes & repeats	Fetal Brain Female	brain

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