Variant report

Variant	rs4946305
Chromosome Location	chr6:118273217-118273218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118266678..118269253-chr6:118273072..118275193,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10499084	0.82[ASN][1000 genomes]
rs11153710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754631	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12664850	0.83[AFR][1000 genomes]
rs1323100	0.81[ASN][1000 genomes]
rs1338974	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416413	0.83[AFR][1000 genomes]
rs1416417	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538456	0.83[AFR][1000 genomes]
rs4946309	0.83[AFR][1000 genomes]
rs6935283	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937496	0.88[ASN][1000 genomes]
rs7738597	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742998	0.81[AFR][1000 genomes]
rs9320621	0.82[AFR][1000 genomes]
rs9372488	0.85[ASN][1000 genomes]
rs9387524	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9387527	0.83[AFR][1000 genomes]
rs9387531	0.81[ASN][1000 genomes]
rs9398468	0.85[ASN][1000 genomes]
rs9401037	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401039	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118271200-118274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:118271600-118274000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118271600-118274400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:118272000-118273600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:118272000-118274200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:118272200-118273600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:118272400-118273400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:118272400-118273600	Enhancers	Fetal Brain Male	brain
10	chr6:118272400-118273800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:118272400-118273800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:118272600-118273400	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:118272800-118273400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:118272800-118273400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:118272800-118273400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:118272800-118273400	Enhancers	Brain Anterior Caudate	brain
17	chr6:118272800-118273400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:118272800-118273400	Enhancers	Brain Substantia Nigra	brain
19	chr6:118272800-118273600	Enhancers	Brain Germinal Matrix	brain
20	chr6:118272800-118273800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:118272800-118274000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:118273000-118273400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:118273000-118273400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:118273000-118273400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:118273000-118273400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:118273000-118273400	Enhancers	Fetal Stomach	stomach
27	chr6:118273200-118273400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:118273200-118274400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:118273200-118277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:118273200-118277200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:118273200-118277200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links