Variant report

Variant	rs6937496
Chromosome Location	chr6:118287039-118287040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10457323	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10457324	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10499084	0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153710	0.88[ASN][1000 genomes]
rs1160428	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12199369	0.81[EUR][1000 genomes]
rs12203409	0.80[AMR][1000 genomes]
rs12212649	0.86[EUR][1000 genomes]
rs12212953	0.83[EUR][1000 genomes]
rs1323100	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1323101	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1338968	0.81[YRI][hapmap]
rs1338974	0.88[ASN][1000 genomes]
rs1338975	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416416	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416417	0.88[ASN][1000 genomes]
rs1416418	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416419	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416420	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416421	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416422	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570447	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1980748	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1998458	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2139048	0.80[AMR][1000 genomes]
rs2211098	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2355792	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2789010	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2789013	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4946304	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946305	0.88[ASN][1000 genomes]
rs6568991	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6903073	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6935283	0.86[ASN][1000 genomes]
rs7738597	0.88[ASN][1000 genomes]
rs7775647	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs912088	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9320624	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9372488	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374685	0.80[AMR][1000 genomes]
rs9374691	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387517	0.80[AMR][1000 genomes]
rs9387518	0.80[AMR][1000 genomes]
rs9387524	0.83[ASN][1000 genomes]
rs9387531	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398465	0.80[AMR][1000 genomes]
rs9398468	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401040	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118285000-118288000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr6:118285400-118288200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118285600-118288200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118286600-118301200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:118286800-118287400	Weak transcription	Fetal Brain Female	brain
6	chr6:118286800-118292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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