Variant report

Variant	rs2355792
Chromosome Location	chr6:118275448-118275449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457323	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10457324	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10499084	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1160428	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11754631	0.86[ASN][1000 genomes]
rs12203409	0.80[AMR][1000 genomes]
rs1323100	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1323101	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1338975	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416416	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416418	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416419	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416420	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416421	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416422	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1570447	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980748	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1998458	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2139048	0.80[AMR][1000 genomes]
rs2211098	0.81[EUR][1000 genomes]
rs2789010	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2789013	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4946304	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6568991	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903073	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937496	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7775647	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912088	0.86[AMR][1000 genomes]
rs9320624	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372488	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9374685	0.80[AMR][1000 genomes]
rs9374691	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9387517	0.80[AMR][1000 genomes]
rs9387518	0.80[AMR][1000 genomes]
rs9387524	0.91[ASN][1000 genomes]
rs9387531	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398465	0.80[AMR][1000 genomes]
rs9398468	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9401040	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118273200-118277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118273200-118277200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:118273200-118277200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:118273400-118277000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:118273400-118277400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:118273400-118277400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:118273400-118277400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:118273400-118277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:118273400-118282200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:118273600-118276800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:118273600-118277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:118273600-118277400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:118273800-118276600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:118274000-118276400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:118274200-118277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:118274400-118275800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:118275000-118276400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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