Variant report

Variant	rs12212649
Chromosome Location	chr6:118319806-118319807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457323	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10457324	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10499084	0.89[EUR][1000 genomes]
rs10872160	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872161	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206792	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212953	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214395	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323100	0.82[EUR][1000 genomes]
rs1338968	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1338975	0.82[EUR][1000 genomes]
rs1416416	0.80[EUR][1000 genomes]
rs1416418	0.82[EUR][1000 genomes]
rs1416419	0.82[EUR][1000 genomes]
rs1416420	0.82[EUR][1000 genomes]
rs1416421	0.82[EUR][1000 genomes]
rs1416422	0.82[EUR][1000 genomes]
rs1570447	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1998458	0.82[EUR][1000 genomes]
rs2789010	0.82[EUR][1000 genomes]
rs4946304	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6568991	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6903073	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6937496	0.86[EUR][1000 genomes]
rs7775647	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9320624	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372488	0.88[EUR][1000 genomes]
rs9374691	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9385027	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385028	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387531	0.88[EUR][1000 genomes]
rs9387535	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398468	0.88[EUR][1000 genomes]
rs9401040	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9401044	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401046	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9481757	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9489295	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv981179	chr6:118317043-118324199	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118315400-118324400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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