Variant report

Variant	rs9401037
Chromosome Location	chr6:118260026-118260027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11153710	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11754631	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1338974	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1361288	0.80[ASN][1000 genomes]
rs1416417	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4946305	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6935283	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6935834	0.80[ASN][1000 genomes]
rs7738597	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9387524	0.83[AMR][1000 genomes]
rs959714	0.80[ASN][1000 genomes]
rs982647	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118259000-118260200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr6:118259000-118260600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:118259000-118260600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:118259000-118260600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:118259000-118260600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:118259000-118261400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:118259200-118261200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:118259400-118260400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:118259400-118260600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:118259400-118260800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:118259600-118260200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:118259600-118260200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:118259600-118260200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:118259600-118260200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:118259600-118260400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:118259800-118260200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:118259800-118260400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:118259800-118266800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:118260000-118261000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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