Variant report

Variant	rs2225133
Chromosome Location	chr20:22696056-22696057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1116556	0.94[ASN][1000 genomes]
rs1116557	0.94[ASN][1000 genomes]
rs2148923	0.86[ASN][1000 genomes]
rs6036192	0.87[ASN][1000 genomes]
rs6075938	0.94[ASN][1000 genomes]
rs6082797	0.87[ASN][1000 genomes]
rs6132541	0.94[ASN][1000 genomes]
rs6132542	0.87[ASN][1000 genomes]
rs6137731	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv178857	chr20:22693441-22700741	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22687200-22697400	Weak transcription	Aorta	Aorta
2	chr20:22692800-22697200	Weak transcription	Stomach Mucosa	stomach
3	chr20:22693200-22697000	Weak transcription	Hela-S3	cervix
4	chr20:22693400-22697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:22696000-22701000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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