Variant report

Variant	rs6036192
Chromosome Location	chr20:22703677-22703678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:22672032..22672589-chr20:22703520..22704575,3	MCF-7	breast:
2	chr20:22697134..22699527-chr20:22702213..22704655,2	K562	blood:
3	chr20:22698060..22699692-chr20:22703539..22705763,2	K562	blood:
4	chr20:22703590..22705719-chr20:22706971..22709788,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1116556	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116557	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2148919	0.91[EUR][1000 genomes]
rs2148920	0.94[EUR][1000 genomes]
rs2148921	0.94[EUR][1000 genomes]
rs2148922	0.94[EUR][1000 genomes]
rs2148923	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2225133	0.87[ASN][1000 genomes]
rs2896874	0.87[EUR][1000 genomes]
rs4999222	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6036177	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6036178	0.91[EUR][1000 genomes]
rs6036194	0.86[EUR][1000 genomes]
rs6048268	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6048269	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6075938	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6075944	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6082792	0.91[EUR][1000 genomes]
rs6082793	0.84[EUR][1000 genomes]
rs6082797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132540	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6132541	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132543	0.88[EUR][1000 genomes]
rs6137726	0.82[AMR][1000 genomes]
rs6137731	0.93[ASN][1000 genomes]
rs6137732	0.87[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22698400-22704000	Weak transcription	HSMMtube	muscle
2	chr20:22698400-22705800	Weak transcription	Right Atrium	heart
3	chr20:22698800-22708000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:22700200-22705800	Weak transcription	A549	lung
5	chr20:22700600-22703800	Weak transcription	Stomach Mucosa	stomach
6	chr20:22700600-22705800	Weak transcription	Hela-S3	cervix
7	chr20:22703400-22703800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr20:22703400-22703800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:22703400-22703800	Enhancers	Fetal Muscle Trunk	muscle
10	chr20:22703400-22704200	Enhancers	Lung	lung
11	chr20:22703600-22703800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr20:22703600-22704000	Enhancers	Fetal Muscle Leg	muscle
13	chr20:22703600-22704000	Enhancers	Left Ventricle	heart
14	chr20:22703600-22704200	Enhancers	Spleen	Spleen
15	chr20:22703600-22704600	Enhancers	Right Ventricle	heart

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