Variant report

Variant	rs2896874
Chromosome Location	chr20:22706412-22706413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1116556	0.85[EUR][1000 genomes]
rs1116557	0.85[EUR][1000 genomes]
rs2148920	0.82[EUR][1000 genomes]
rs2148921	0.82[EUR][1000 genomes]
rs2148922	0.82[EUR][1000 genomes]
rs2148923	0.87[EUR][1000 genomes]
rs4999222	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs6036177	0.83[EUR][1000 genomes]
rs6036178	0.82[EUR][1000 genomes]
rs6036192	0.87[EUR][1000 genomes]
rs6036194	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075938	0.85[EUR][1000 genomes]
rs6082793	0.93[EUR][1000 genomes]
rs6082797	0.87[EUR][1000 genomes]
rs6132540	0.85[EUR][1000 genomes]
rs6132541	0.85[EUR][1000 genomes]
rs6132542	0.87[EUR][1000 genomes]
rs6132543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6137732	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22698800-22708000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr20:22704200-22708000	Weak transcription	Spleen	Spleen
3	chr20:22704600-22708400	Weak transcription	Stomach Mucosa	stomach
4	chr20:22705200-22709000	Weak transcription	Right Ventricle	heart
5	chr20:22706000-22709000	Weak transcription	NHEK	skin
6	chr20:22706200-22708200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:22706200-22708400	Weak transcription	HSMM	muscle
8	chr20:22706200-22708800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:22706200-22708800	Weak transcription	A549	lung
10	chr20:22706200-22708800	Weak transcription	Hela-S3	cervix
11	chr20:22706200-22709000	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links