Variant report

Variant	rs6082793
Chromosome Location	chr20:22679531-22679532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1116556	0.86[EUR][1000 genomes]
rs1116557	0.85[EUR][1000 genomes]
rs2148919	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2148920	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2148921	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2148922	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2148923	0.84[EUR][1000 genomes]
rs2896874	0.93[EUR][1000 genomes]
rs4999222	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6036177	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036178	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036192	0.84[EUR][1000 genomes]
rs6036194	0.92[EUR][1000 genomes]
rs6048268	0.82[EUR][1000 genomes]
rs6048269	0.82[EUR][1000 genomes]
rs6075938	0.86[EUR][1000 genomes]
rs6082792	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6082797	0.84[EUR][1000 genomes]
rs6132540	0.85[EUR][1000 genomes]
rs6132541	0.86[EUR][1000 genomes]
rs6132542	0.84[EUR][1000 genomes]
rs6132543	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6137732	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22672800-22680400	Weak transcription	Fetal Heart	heart
2	chr20:22673000-22680600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:22676200-22679800	Weak transcription	Left Ventricle	heart
4	chr20:22678600-22680000	Enhancers	HUVEC	blood vessel
5	chr20:22678800-22681200	Enhancers	NHEK	skin
6	chr20:22679000-22681400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr20:22679000-22682800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr20:22679200-22679800	Enhancers	HSMMtube	muscle
9	chr20:22679200-22681800	Enhancers	HMEC	breast
10	chr20:22679200-22682000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:22679400-22679800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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