Variant report

Variant	rs6132543
Chromosome Location	chr20:22704005-22704006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1116556	0.86[EUR][1000 genomes]
rs1116557	0.85[EUR][1000 genomes]
rs2148920	0.82[EUR][1000 genomes]
rs2148921	0.82[EUR][1000 genomes]
rs2148922	0.82[EUR][1000 genomes]
rs2148923	0.88[EUR][1000 genomes]
rs2896874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4999222	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs6036177	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036178	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036192	0.88[EUR][1000 genomes]
rs6036194	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6075938	0.86[EUR][1000 genomes]
rs6082793	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6082797	0.88[EUR][1000 genomes]
rs6132540	0.85[EUR][1000 genomes]
rs6132541	0.86[EUR][1000 genomes]
rs6132542	0.88[EUR][1000 genomes]
rs6137732	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22698400-22705800	Weak transcription	Right Atrium	heart
2	chr20:22698800-22708000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:22700200-22705800	Weak transcription	A549	lung
4	chr20:22700600-22705800	Weak transcription	Hela-S3	cervix
5	chr20:22703400-22704200	Enhancers	Lung	lung
6	chr20:22703600-22704200	Enhancers	Spleen	Spleen
7	chr20:22703600-22704600	Enhancers	Right Ventricle	heart
8	chr20:22703800-22704600	Enhancers	Stomach Mucosa	stomach
9	chr20:22704000-22704200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:22704000-22704200	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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