Variant report

Variant	rs6036177
Chromosome Location	chr20:22678889-22678890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22678470..22680900-chr20:22681245..22683866,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1116556	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1116557	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2148919	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2148920	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2148921	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2148922	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2148923	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2896874	0.83[EUR][1000 genomes]
rs4999222	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6036178	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036192	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6036194	0.81[EUR][1000 genomes]
rs6048268	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048269	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6075938	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6075944	0.82[EUR][1000 genomes]
rs6082792	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6082793	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6082797	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6132540	0.94[EUR][1000 genomes]
rs6132541	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6132542	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6132543	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6137726	0.83[EUR][1000 genomes]
rs6137727	0.82[EUR][1000 genomes]
rs6137732	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22672800-22680400	Weak transcription	Fetal Heart	heart
2	chr20:22673000-22680600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:22676200-22679200	Weak transcription	Right Atrium	heart
4	chr20:22676200-22679800	Weak transcription	Left Ventricle	heart
5	chr20:22676400-22679200	Weak transcription	HSMMtube	muscle
6	chr20:22678600-22680000	Enhancers	HUVEC	blood vessel
7	chr20:22678800-22681200	Enhancers	NHEK	skin

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