Variant report

Variant	rs6075944
Chromosome Location	chr20:22725941-22725942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1116556	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1116557	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2148919	0.81[EUR][1000 genomes]
rs2148920	0.83[EUR][1000 genomes]
rs2148921	0.83[EUR][1000 genomes]
rs2148922	0.83[EUR][1000 genomes]
rs2148923	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4999222	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6036177	0.82[EUR][1000 genomes]
rs6036178	0.81[EUR][1000 genomes]
rs6036192	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6075938	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6082792	0.81[EUR][1000 genomes]
rs6082797	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6132540	0.87[EUR][1000 genomes]
rs6132541	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6132542	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1057305	chr20:22711334-22733613	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22723400-22726000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:22723400-22726000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:22723400-22726000	Enhancers	HMEC	breast
4	chr20:22723600-22726800	Enhancers	NHEK	skin
5	chr20:22724200-22726000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:22725600-22726000	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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