Variant report

Variant	rs2148923
Chromosome Location	chr20:22701756-22701757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1116556	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1116557	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2148919	0.91[EUR][1000 genomes]
rs2148920	0.94[EUR][1000 genomes]
rs2148921	0.94[EUR][1000 genomes]
rs2148922	0.94[EUR][1000 genomes]
rs2225133	0.86[ASN][1000 genomes]
rs2896874	0.87[EUR][1000 genomes]
rs4999222	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6036177	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6036178	0.91[EUR][1000 genomes]
rs6036192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036194	0.86[EUR][1000 genomes]
rs6048268	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6048269	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6075938	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6075944	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6082792	0.91[EUR][1000 genomes]
rs6082793	0.84[EUR][1000 genomes]
rs6082797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132540	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6132541	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6132542	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132543	0.88[EUR][1000 genomes]
rs6137726	0.82[AMR][1000 genomes]
rs6137731	0.91[ASN][1000 genomes]
rs6137732	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22698400-22704000	Weak transcription	HSMMtube	muscle
2	chr20:22698400-22705800	Weak transcription	Right Atrium	heart
3	chr20:22698800-22708000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:22699800-22703400	Weak transcription	Lung	lung
5	chr20:22699800-22703600	Weak transcription	Left Ventricle	heart
6	chr20:22700200-22703400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr20:22700200-22703400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr20:22700200-22703400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr20:22700200-22703600	Weak transcription	Spleen	Spleen
10	chr20:22700200-22705800	Weak transcription	A549	lung
11	chr20:22700600-22703600	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:22700600-22703800	Weak transcription	Stomach Mucosa	stomach
13	chr20:22700600-22705800	Weak transcription	Hela-S3	cervix

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