Variant report

Variant	rs1116556
Chromosome Location	chr20:22688175-22688176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1116557	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148919	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2148920	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148921	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148922	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148923	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2225133	0.94[ASN][1000 genomes]
rs2896874	0.85[EUR][1000 genomes]
rs4999222	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6036177	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036178	0.93[EUR][1000 genomes]
rs6036192	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6036194	0.84[EUR][1000 genomes]
rs6048268	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6048269	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6075938	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6075944	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6082792	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6082793	0.86[EUR][1000 genomes]
rs6082797	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132540	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6132541	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132542	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6132543	0.86[EUR][1000 genomes]
rs6137726	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6137727	0.81[EUR][1000 genomes]
rs6137731	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6137732	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833943	chr20:22657016-22703454	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22687200-22697400	Weak transcription	Aorta	Aorta
2	chr20:22688000-22688200	Enhancers	Stomach Mucosa	stomach

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