Variant report

Variant	rs2225219
Chromosome Location	chr6:70134495-70134496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1328720	0.84[EUR][1000 genomes]
rs1328721	0.84[EUR][1000 genomes]
rs2067088	0.84[EUR][1000 genomes]
rs2183069	0.80[EUR][1000 genomes]
rs2437277	0.80[EUR][1000 genomes]
rs2572998	0.80[EUR][1000 genomes]
rs2573027	0.80[EUR][1000 genomes]
rs2770313	0.80[EUR][1000 genomes]
rs585831	0.80[EUR][1000 genomes]
rs6913031	0.84[EUR][1000 genomes]
rs913542	0.84[EUR][1000 genomes]
rs928029	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70131800-70136000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:70132200-70135000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:70133000-70137800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:70133200-70136600	Weak transcription	Fetal Brain Female	brain
5	chr6:70133400-70134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:70133800-70134800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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