Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11752704	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1328720	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1328721	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1328730	0.81[AMR][1000 genomes]
rs1410694	0.81[AMR][1000 genomes]
rs1743772	0.91[EUR][1000 genomes]
rs1967451	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2067088	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2094596	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2183069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2225219	0.80[EUR][1000 genomes]
rs2437277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2572998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2573016	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2770313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2770314	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs585831	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs598251	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6913031	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs913542	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs928029	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv5340	chr6:70156159-70200802	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70165200-70167400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:70165600-70167200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:70165600-70167400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:70166000-70167200	Enhancers	Brain Substantia Nigra	brain
5	chr6:70166400-70167400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:70166600-70167800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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