Variant report

Variant	rs11752704
Chromosome Location	chr5:74430163-74430164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1328720	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1328721	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1328730	0.81[AMR][1000 genomes]
rs1410694	0.81[AMR][1000 genomes]
rs1743772	0.87[EUR][1000 genomes]
rs1967451	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2067088	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2094596	0.94[AMR][1000 genomes]
rs2183069	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2437277	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2572998	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2573016	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2573027	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2770313	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2770314	0.94[AMR][1000 genomes]
rs585831	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs598251	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6913031	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs913542	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs928029	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links