Variant report

Variant	rs1328730
Chromosome Location	chr6:70108542-70108543
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11752704	0.81[AMR][1000 genomes]
rs1328720	0.81[AMR][1000 genomes]
rs1328721	0.81[AMR][1000 genomes]
rs1410694	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1967451	0.81[AMR][1000 genomes]
rs2067088	0.81[AMR][1000 genomes]
rs2183069	0.81[AMR][1000 genomes]
rs2437277	0.81[AMR][1000 genomes]
rs2572998	0.81[AMR][1000 genomes]
rs2573016	0.81[AMR][1000 genomes]
rs2573027	0.81[AMR][1000 genomes]
rs2770313	0.81[AMR][1000 genomes]
rs585831	0.81[AMR][1000 genomes]
rs6913031	0.81[AMR][1000 genomes]
rs913542	0.81[AMR][1000 genomes]
rs928029	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70097200-70109000	Weak transcription	Fetal Brain Male	brain
2	chr6:70108200-70108800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:70108400-70108800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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